PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_48209.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 126aa    MW: 14842.3 Da    PI: 10.3005
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_48209.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-06931123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C+k F r  nL+ H r H
  Rsa1.0_48209.1_g00001.1  9 FVCEICNKGFQRDQNLQLHRRGH 31
                             89*******************88 PP

2zf-C2H218.36.4e-0686108123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ykC++C+k +  +s+ k H +t+
  Rsa1.0_48209.1_g00001.1  86 YKCEKCSKKYAVQSDWKAHAKTC 108
                              9*******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.74E-9831No hitNo description
Gene3DG3DSA:3.30.160.602.5E-6831IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949931IPR007087Zinc finger, C2H2
SMARTSM003550.017931IPR015880Zinc finger, C2H2-like
PfamPF121711.2E-5931IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM00355735181IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-674107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.74E-981106No hitNo description
SMARTSM003557486106IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
TTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIKKKV YICPIKTCVH  60
HDSSRALGDL TGIKKHYSRK HGEKKYKCEK CSKKYAVQSD WKAHAKTCGT REYKCDCGTL  120
FSRYYI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052401e-138AB005240.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16.
GenBankAL1630021e-138AL163002.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F15A17 (ESSA project).
GenBankCP0026881e-138CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623652.12e-88PREDICTED: zinc finger protein JACKDAW
SwissprotQ700D22e-86IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLA0A078CXU34e-88A0A078CXU3_BRANA; BnaC03g01080D protein
TrEMBLA0A0D3AZI43e-91A0A0D3AZI4_BRAOL; Uncharacterized protein
STRINGBra005741.1-P3e-87(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-75C2H2-like zinc finger protein